Package: LorMe 1.0.1
LorMe: Lightening One-Code Resolving Microbial Ecology Solution
Provides a robust collection of functions tailored for microbial ecology analysis, encompassing both data analysis and visualization. It introduces an encapsulation feature that streamlines the process into a summary object. With the initial configuration of this summary object, users can execute a wide range of analyses with a single line of code, requiring only two essential parameters for setup. The package delivers comprehensive outputs including analysis objects, statistical outcomes, and visualization-ready data, enhancing the efficiency of research workflows. Designed with user-friendliness in mind, it caters to both novices and seasoned researchers, offering an intuitive interface coupled with adaptable customization options to meet diverse analytical needs.
Authors:
LorMe_1.0.1.tar.gz
LorMe_1.0.1.zip(r-4.5)LorMe_1.0.1.zip(r-4.4)LorMe_1.0.1.zip(r-4.3)
LorMe_1.0.1.tgz(r-4.4-any)LorMe_1.0.1.tgz(r-4.3-any)
LorMe_1.0.1.tar.gz(r-4.5-noble)LorMe_1.0.1.tar.gz(r-4.4-noble)
LorMe_1.0.1.tgz(r-4.4-emscripten)LorMe_1.0.1.tgz(r-4.3-emscripten)
LorMe.pdf |LorMe.html✨
LorMe/json (API)
# Install 'LorMe' in R: |
install.packages('LorMe', repos = c('https://wangnq111.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/wangnq111/lorme/issues
- Facet_group - Tax summary object with Facet 2x2 Groups
- Three_group - Tax summary object with three groups
- Two_group - Tax summary object with two groups
- testotu - Test otudata
Last updated 2 months agofrom:efe616db4d. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 14 2024 |
R-4.5-win | OK | Oct 14 2024 |
R-4.5-linux | OK | Oct 14 2024 |
R-4.4-win | OK | Oct 14 2024 |
R-4.4-mac | OK | Oct 14 2024 |
R-4.3-win | OK | Oct 14 2024 |
R-4.3-mac | OK | Oct 14 2024 |
Exports:Alpha_diversity_calculatorAlpha_diversity_calculator2anova_reportauto_signif_testcirculation_lmcolor_schemecombine_and_translatecommunity_plotcompare_plotDeseq_analysisDeseq_analysis2differential_barDimension_reductionFilter_functionindicator_analysiskruskal_reportmanhattanModule_abundanceModule_compositionncNC_removenetwork_analysisnetwork_analysis2network_statnetwork_visualnetwork_visual_renetwork_withdiffobject_configstructure_plotsub_tax_summaryt_test_reporttax_summarytbRDA_analysistheme_zgTop_taxavolcano_plotwilcox_test_report
Dependencies:abindagricolaeAlgDesignapeaskpassbackportsbase64encbootbroombslibcachemcarcarDatacellrangercheckmateclasscliclustercodetoolscoincolorspacecommonmarkcorrplotcowplotcpp11crayoncurldata.tabledeldirDerivDescToolsdigestdoBydplyre1071evaluateExactexpmfansifarverfastmapfdrtoolfontawesomeforeignFormulafsgenericsggalluvialggplot2ggpubrggrepelggsciggsignifgldgluegmpgridExtragtableHHhighrHmischmshtmlTablehtmltoolshtmlwidgetshttpuvhttrigraphinterpisobandjpegjquerylibjsonliteknitrlabelinglaterlatticelatticeExtralazyevalleapslibcoinlifecyclelme4lmomlmtestmagrittrMASSMatrixMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmodeltoolsmultcompmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivopensslpbkrtestpermutepillarpkgconfigplyrpngpolynomprettyunitsprogresspromisesproxypurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadxlrematchreshape2rlangrmarkdownRmpfrrootSolverpartrstatixrstudioapisandwichsassscalesshinysourcetoolsSparseMstringistringrsurvivalsysTH.datatibbletidyrtidyselecttinytexutf8vcdvctrsveganviridisviridisLitewithrxfunxtableyamlzoo